PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0171000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 261aa MW: 27861.4 Da PI: 7.7843 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 208.7 | 2.1e-64 | 27 | 218 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................llee 74 eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+ aa+ + + + ++e+ ORGLA04G0171000.1 27 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQ 118 579*******************************************998665555554555555566668999*999999999887654444 PP YABBY 75 lkveeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + ++++s +++ ++ +++++ ++++ + p+ +p ++r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn ORGLA04G0171000.1 119 ASPNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 207 4444444433332222...22222222233323333333444415569******************************************** PP YABBY 160 WahfPkihfgl 170 WahfP+ihfgl ORGLA04G0171000.1 208 WAHFPHIHFGL 218 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.0E-71 | 27 | 218 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-7 | 160 | 211 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-4 | 170 | 210 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 7.91E-5 | 172 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMSSAPETFS LDHLSQHQQQ QPPPLAEQEQ LCYVHCNFCD TILAVGVPCS SLFKTVTVRC 60 GHCANLLSVN LRGLLLPAAA STANQLPFGQ ALLSPTSPHG LLDEVPSFQA PASLMTEQAS 120 PNVSSITSSN SSCANNAPAT SMASAANKAT QREPQQPKNA PSANRTSEKR QRVPSAYNRF 180 IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQGLKKTGIQ SQDGAGECML 240 FKDGLYAAAA TAASSMGVTP F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0171000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274017 | 0.0 | AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds. | |||
GenBank | AK070205 | 0.0 | AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634596.1 | 1e-171 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 1e-172 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-172 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | I1PNE1 | 0.0 | I1PNE1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0171000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-57 | YABBY family protein |
Publications ? help Back to Top | |||
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