PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0165700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 467aa    MW: 49874.3 Da    PI: 8.7147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0165700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19215265256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  ORGLA04G0165700.1 215 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 265
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-32214273No hitNo description
Gene3DG3DSA:3.30.730.105.3E-32215273IPR001471AP2/ERF domain
SMARTSM003802.5E-38215278IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-23215274IPR016177DNA-binding domain
PROSITE profilePS5103222.998215272IPR001471AP2/ERF domain
PfamPF008472.8E-12216265IPR001471AP2/ERF domain
PRINTSPR003678.5E-11216227IPR001471AP2/ERF domain
PRINTSPR003678.5E-11238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDAPSGESGG GGGGGGGGRR WKGKGVTPIQ PRRQLGTVLE DSSAALLRPL KKIGRSPDRL  60
LRSASSLSTS SSAPPSPRSS SASDAPVRVI SSSPSSPSPP SARHVFPFAY EASTTTVGGS  120
PRLHPLSWQQ SSMSQPASPQ QQQQQPLQHQ QMISFGASPP CSTTQFVVPE NAQQQQMLLR  180
YWSEALNLSP RGGPGGVPPW LYQQLLRVPP PPQKLYRGVR QRHWGKWVAE IRLPRNRTRL  240
WLGTFDTAED AAMAYDREAF KLRGENARLN FPDRFLGKGR AGGSGRTSVS SSAAAAASCS  300
SSSPSPPETP DDANTQQQAP QQREQRDTAG VSMEKKQPQP PAPTSRQEGC SGGDAAAPYP  360
AEMLHAPAAC GGMWVAPDES WFSTWGPGSS FWDDYDMDNA RGLFLHPRFT GDETSMDHSG  420
TQATVPAVAA TAAGMSMPCD DVPVTSSSSD LPPQGTPQTP TFMWKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20214274465ATERF1
3gcc_A5e-20214274465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0165700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634091.10.0ethylene-responsive transcription factor ERF054
TrEMBLI1PN880.0I1PN88_ORYGL; Uncharacterized protein
STRINGORGLA04G0165700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-35ERF family protein