PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0265300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 341aa    MW: 36519.6 Da    PI: 6.5258
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0265300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.24.4e-1841108268
           trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                        Wt  e+++L+ea++++ +  r ++ +  ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e
  ORGLA03G0265300.1  41 WTLPETMLLVEAKKRVSDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAHE 108
                        *************99988888357899**************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0843398IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-534100IPR009057Homeodomain-like
SuperFamilySSF466892.33E-636103IPR009057Homeodomain-like
PfamPF138373.3E-1439111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDADVLLGQE EDEEAMNAAM AASTAGSAMA AAAREYRRGN WTLPETMLLV EAKKRVSDGR  60
RPAADQGLAR WRWVEDYCWR RGCRRSQNQC NDRWDNLMRD YKKVRAHELA GGGGGPAESY  120
WVMGRTERKE KGLPANLLRE IYDAMGEVVE RRPMSSGGGG GGAVFLAGAS SSGSGGLADV  180
PAMAMQASPL AQLLPRPLEA TANCSSGSPE RKRRRPSLDN EPPGGSTPPA TTGRQGHQEH  240
DDDDDEYAHH GADESSDDDG GLGGAIGRCA AILSVALENR EASEERRHRE VVAAEERRGR  300
ARQARREAGE QCMAGLAAAV SQLAGSMLAL AAKRRGPAAP K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0265300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357920.0AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879661.10.0trihelix transcription factor ASR3
TrEMBLI1PE570.0I1PE57_ORYGL; Uncharacterized protein
STRINGORGLA03G0265300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-40Trihelix family protein