PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0141100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 170aa MW: 18766.4 Da PI: 6.5347 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.8 | 3.6e-11 | 20 | 79 | 3 | 62 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e + rk +NR++A+rsR +K+++++ L+ ++++L eN+a++ + + + +++e ORGLA03G0141100.1 20 EERQRNRKRSNRLSAQRSRMKKQQYVDGLAVEAEQLRRENDAMRAGAGAVLQRCRLVEQE 79 445556888***********************************9887777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.5E-10 | 15 | 71 | No hit | No description |
SMART | SM00338 | 8.6E-12 | 17 | 82 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.9E-8 | 19 | 68 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.714 | 20 | 63 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.95E-8 | 22 | 66 | No hit | No description |
CDD | cd14702 | 1.80E-13 | 23 | 74 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 26 | 40 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSVAPATEGS ARRSAAAEEE ERQRNRKRSN RLSAQRSRMK KQQYVDGLAV EAEQLRREND 60 AMRAGAGAVL QRCRLVEQEN RVLAAHAREL CSALQLRASQ LRVLGEVAGV PLDVPDVADH 120 LVQLYGGDLG MTPLSPPPLL PPLPPQIEML FFQPDSVMDP VSMLQGYENI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0141100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631799.1 | 2e-92 | ocs element-binding factor 1 | ||||
TrEMBL | I1PAL5 | 1e-118 | I1PAL5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0141100.1 | 1e-118 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12504 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 6e-08 | basic leucine-zipper 44 |