PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0073500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 34628.4 Da    PI: 6.0477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0073500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-112482881055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  ORGLA03G0073500.1 248 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 288
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-14241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12243297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12247292No hitNo description
PfamPF000104.5E-8248288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEDSEAMAQL LGVQYFGNDQ EQQQPAAAAP PAMYWPAHDA ADQYYGSAPY CYMQQQQHYG  60
CYDGGAMVAG GDFFVPEEQL VADPSFMVDL NLEFEDQNGG DAGGAGSSAA AAAAATKMTP  120
ACKRKVEDHK DESSTDNVAR KKARSTAATV VQKKGNKNAQ SKKAQKGACS RSSNQKESNG  180
GGDGGNVQSS STNYLSDDDS LSLEMTSCSN VSSASKKSSL SSPATGHGGA KARAGRGAAT  240
DPQSLYARKR RERINERLKI LQNLIPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDMW  300
MFAPIAYNGV NVGLDLKISP PQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0073500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235680.0AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322140.0AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.10.0transcription factor bHLH85
TrEMBLA0A0D3FF640.0A0A0D3FF64_9ORYZ; Uncharacterized protein
TrEMBLI1P8N90.0I1P8N9_ORYGL; Uncharacterized protein
STRINGORGLA03G0073500.10.0(Oryza glaberrima)
STRINGOBART03G07520.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-45bHLH family protein