PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0100500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 416aa    MW: 42385 Da    PI: 7.826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0100500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13131181255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  ORGLA02G0100500.1 131 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 181
                        789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.40E-13127185No hitNo description
PROSITE profilePS5088815.237129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17129204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-13131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MADGGSGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA  60
AAASTGAGGG ARMTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSSSSPAALA  120
AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL  180
QQVLRSLEAK KNRKAYADQV LSPRPSPAAA ALMVKPTPPI SPRFAAAAAA GVPISPRTPT  240
PGSPYNKHAA AAAAAARPPH PAAATSSCSV AYSMSPAMTP TSSSSTTTTT THELSPAPAF  300
LPILDSLVTE LAARGGASCR PLVIPSSAAA IAGIVGVPDV RVEFAGPNLV LKTVSHRAPG  360
QALKIIAALE SLSLEILHVS ICTVDDATVL SFTIKIGIEC ELSAEELVQE IQQTFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182106RRREGRDEEKGGGGGGGPPAQKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0100500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624375.20.0transcription factor SPEECHLESS
TrEMBLI1NZ490.0I1NZ49_ORYGL; Uncharacterized protein
STRINGORGLA02G0100500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-41bHLH family protein