PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0079000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 380aa    MW: 39607.7 Da    PI: 4.8766
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0079000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.61.6e-24209261154
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                        k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQ  R
  ORGLA01G0079000.1 209 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQAAR 261
                        5689*****************.*****************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.386206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-22207261IPR009057Homeodomain-like
SuperFamilySSF466894.66E-15207262IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23209261IPR006447Myb domain, plants
PfamPF002495.9E-6212258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADVADEVD AFIVDDSCLL EYIDFSCCDV  60
PFFHADDGDI LPDLEVDPTE LLAEFASSPD DEPPPTSAAS PGEPAAAGGA KEDVKEDGAA  120
AAADYDGSPP PPRGKKKDEE ERSSSLLEEK DAKNGGGGGD EVLSAVTTED SSAGAAKSSS  180
PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL  240
ELMGIECLTR HNIASHLQAA RKWGPQAVTP GTPCMPPPLP PAAMLQRFPV PPVPGMVPHP  300
MYRPIPPPLP PQGNKLAALQ LQLDAHPSKE SIDAAIGDVL VKPWLPLPLG LKPPSLDSVM  360
SELHKQGIPK VPPAASGAAG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0079000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340430.0CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-136probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-137GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLI1NLQ00.0I1NLQ0_ORYGL; Uncharacterized protein
STRINGORGLA01G0079000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-29GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]