PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G15600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 25801.1 Da PI: 7.0756 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H OPUNC12G15600.1 97 HRCSVCGKAFASYQALGGHKASH 119 79**********99998888877 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 157 | 176 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk F++ L H OPUNC12G15600.1 157 HECNVCGKAFPTGQALGGHK 176 78*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.023 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.365 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.6E-10 | 97 | 119 | No hit | No description |
Pfam | PF13912 | 5.7E-13 | 97 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.6E-10 | 152 | 179 | No hit | No description |
Pfam | PF13912 | 2.5E-13 | 156 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.6E-5 | 157 | 179 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.388 | 157 | 179 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAVEAVLEAA TVVAPSPDRE VAAAAAAARS SSEEEAEVIG GGQVEAGWGK RKRSRRRRGQ 60 QQQQLPPTEE EYLALCLLML ARGRRDGDGD DVAAVEHRCS VCGKAFASYQ ALGGHKASHR 120 KPPPAAMVDE EVVEMKPAIA TPSSSASGVS GGGVRAHECN VCGKAFPTGQ ALGGHKRCHY 180 DGTIGSAAAG ASKPAAKTVA APASRGFDLN LPALPEVVGD QRCTAEAAAA EDDEVLSPLA 240 FKKPRLMIPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288963 | 1e-161 | AK288963.1 Oryza sativa Japonica Group cDNA, clone: J090084H09, full insert sequence. | |||
GenBank | AL772427 | 1e-161 | AL772427.4 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-161 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT841608 | 1e-161 | CT841608.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105H24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620192.1 | 5e-83 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 5e-44 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0E0MP33 | 1e-178 | A0A0E0MP33_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G15600.1 | 1e-179 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 4e-31 | zinc-finger protein 2 |