PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G03650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 440aa    MW: 48105 Da    PI: 4.7566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G03650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS90.82.2e-28762263149
             GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                      +lL++ A av++gd+  a+a+++rl +l a  +g+      p+  la yf+++L+ r+    + ++ a +ps+           a ++++e++P
  OPUNC12G03650.1  76 DLLVAGAMAVEDGDAVHASAIMSRLDDLlADIAGRgsceasPVDHLACYFARGLKLRIRF-LTWISGAATPSPP----------ANRMLQELTP 158
                      689999*******************9997655554556666*****************97.5555555555554..........5789****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgs 149
                      ++kf+h+taNqaIlea++ +  vHi+Df++++G+QW +L+  La  +        ++pp + +T++ s
  OPUNC12G03650.1 159 FIKFAHFTANQAILEATADDLDVHIVDFNVGEGVQWSSLMSDLAVAAagrhrsssGKPPLFHLTVITS 226
                      *******************************************9644333355656699999999987 PP
2GRAS34.43e-11289437227373
             GRAS 227 vLklvkslsPkvvvvveqeadh.nse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                      +L +v  l+Pk+v+++e e+ + +++          ++ e f++a+ +++a+++s+++ +   s ++   E+ +l r++++     g +     
  OPUNC12G03650.1 289 LLGTVTFLNPKLVILIEDELFRiSKNpppslaaaapPLPEFFFDAVAHFTAVMESTASCFM--SYDDDYDEAWWL-RRVEEEMVGPGWR----- 374
                      7899999************7663444678999999999999***************77752..333333333333.3333333333333..... PP

             GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                       tl       ++ G+++ +ls++ ++q k+l   ++  g+ v  +e+g l l+Wk+r+L+svS+W
  OPUNC12G03650.1 375 -TLWLCGGGAQMEGLRACELSSFSVAQRKMLAWLFG-GGFGVVhQEKGRLALCWKSRALISVSVW 437
                      .222223345778***********************.67776638899999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.44548418IPR005202Transcription factor GRAS
PfamPF035147.5E-2676226IPR005202Transcription factor GRAS
PfamPF035141.0E-8289437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MRMPLCMNLM IQDHEFLDMM VIQESANDLL QLQDDLSFSN ADPLLASYDE KLAVAGQEKN  60
GNLVAAQEEL MQSKDDLLVA GAMAVEDGDA VHASAIMSRL DDLLADIAGR GSCEASPVDH  120
LACYFARGLK LRIRFLTWIS GAATPSPPAN RMLQELTPFI KFAHFTANQA ILEATADDLD  180
VHIVDFNVGE GVQWSSLMSD LAVAAAGRHR SSSGKPPLFH LTVITSGAGT PRTADAPRSL  240
HVHDGDGDDD LHHELAMICN GSSSSVILTR DTAANTPYYT PLHRLKLLLL GTVTFLNPKL  300
VILIEDELFR ISKNPPPSLA AAAPPLPEFF FDAVAHFTAV MESTASCFMS YDDDYDEAWW  360
LRRVEEEMVG PGWRTLWLCG GGAQMEGLRA CELSSFSVAQ RKMLAWLFGG GFGVVHQEKG  420
RLALCWKSRA LISVSVWCPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-1610443726374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139061e-128AL713906.3 Oryza sativa chromosome 12, . BAC OJ1587_D05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-128AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978326.31e-113nodulation-signaling pathway 2 protein
TrEMBLA0A0E0MJY20.0A0A0E0MJY2_ORYPU; Uncharacterized protein
STRINGOPUNC12G03650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171141111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-17GRAS family protein