PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G00960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 230aa    MW: 25578.1 Da    PI: 8.5574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G00960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.6e-2248109259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  OPUNC12G00960.1  48 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 109
                      8***************************99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-2435110IPR003657WRKY domain
SuperFamilySSF1182909.68E-2339110IPR003657WRKY domain
PROSITE profilePS5081115.99642111IPR003657WRKY domain
SMARTSM007742.2E-3347110IPR003657WRKY domain
PfamPF031064.7E-2548108IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALDSVPSCP SDLGPSRPAT STRTPQQQRV SPRKEERTWT TDTYAPYDDG HQWRKYGEKK  60
LSNSNFPRFY YRCTYKNDMK CPATKQVQQK DTNDPPLFSV TYFNHHTCNS SSKIVGSTPD  120
TAAQSSSRKA ISICFNSHGT TSGQPTFLSP SASLLSPSIQ SYSSNQQPDM NTYSRQFQWT  180
DTSSSTGNAP VKTEADDYAE ASASTNTTGA LSRTLLPIGQ SRCIEYFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1648108968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0732430.0AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616442.11e-142probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0E0MIX51e-170A0A0E0MIX5_ORYPU; Uncharacterized protein
STRINGOPUNC12G00960.11e-171(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-21WRKY DNA-binding protein 55