PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G00230.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 544aa    MW: 60223.3 Da    PI: 7.4305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G00230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-31404460360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  OPUNC12G00230.2 404 DGYSWRKYGQKQVKGSEFPRSYYKCTQPTCPVKRKVETTP-DGQIAEIVYNGEHNHPK 460
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540014.32E-3817228No hitNo description
PROSITE profilePS5060013.7825183IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.4E-587177No hitNo description
PfamPF029022.9E-492182IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.802.1E-27397461IPR003657WRKY domain
PROSITE profilePS5081123.652397461IPR003657WRKY domain
SuperFamilySSF1182903.53E-24399461IPR003657WRKY domain
SMARTSM007741.4E-33402460IPR003657WRKY domain
PfamPF031063.2E-24404459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAMRPRHGGG GGEEEEERVL SHGDVVLLRC DLTILRGPHF LNDRIIAFYL AHLHHHDDDD  60
LLLLPPSIPY LLSNLPDPAS VAEPLRLASR RLLLLPVNDN PDVSHADGGS HWTLLVLDNS  120
VSGARFVHHD SLPPTNLPAA RRLAAVLRPL LPASPIPLIE GPTPRQTNGY DCGVFVLAVA  180
KAICHWWGWP PRECDRTHSD WLEAVKREVN ADSVKAMRTE LLQLIETLIQ DKKNNTNQYK  240
EGSYLTSASL PTTSRPNALQ LNFLVTLRLH LPVSACHSTQ DFGTWWDMES HKKVAAVKPV  300
ASRPSSRLRS FSMLQKDSTA TDSPWLTSLE EEIILRRPKA TRFTPSLSDS STEIAATRLE  360
DNGTYATYDR KKAATGQVAC WDNLTVSQSV RKPNVSAKNS LSYDGYSWRK YGQKQVKGSE  420
FPRSYYKCTQ PTCPVKRKVE TTPDGQIAEI VYNGEHNHPK PHPPKRPSLS TSVDIVVATN  480
DAGLENQLEG CDKAIGSDAV VEAFKGGCHC LDGFRNGNEI SDCQKRDIIS IISPVVFILP  540
CIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A7e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkq_B7e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkq_C7e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkq_D7e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkr_A7e-24191855176SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.10.0PREDICTED: uncharacterized protein LOC102718700
TrEMBLA0A0E0MIL30.0A0A0E0MIL3_ORYPU; Uncharacterized protein
STRINGOPUNC12G00230.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.16e-27WRKY family protein