PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G19440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 156aa MW: 17263.9 Da PI: 4.3967 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.1 | 2.7e-21 | 14 | 70 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ g+ ++Y+rCt++ gC ++k+++r + dp ++++ Y+g H++ OPUNC11G19440.1 14 DDGYSWRKYGQKDILGA---KGYFRCTHRntqGCVATKQIQRRDADPLLFDVEYHGAHTC 70 8**************97...58******98889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.581 | 8 | 68 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.3E-21 | 10 | 72 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-20 | 11 | 72 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-30 | 13 | 72 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-20 | 14 | 70 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MKRKTQVRLS SVQDDGYSWR KYGQKDILGA KGYFRCTHRN TQGCVATKQI QRRDADPLLF 60 DVEYHGAHTC GQREASLNEQ VIWWSRSSAS STEQSQSSST ITYTAAGSVE DDEEEGGVTS 120 AANFLSMDDM LDLGGGDVID MDFPSFDFDA IEALLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-16 | 14 | 70 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969356.1 | 3e-33 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0E0MI85 | 1e-112 | A0A0E0MI85_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G19440.1 | 1e-113 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 4e-25 | WRKY family protein |