PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G05310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 272aa    MW: 30333.1 Da    PI: 7.3704
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G05310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.6e-2163124259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       Dg+ WrKYG K++k+s fpr YYrC+++   +C+++k v++++  dp +  +tY  +H+++
  OPUNC10G05310.1  63 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHTHTCN 124
                      7***************************99999*******9865269*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.84E-2258125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-2261124IPR003657WRKY domain
SMARTSM007746.3E-3462125IPR003657WRKY domain
PROSITE profilePS5081114.58463121IPR003657WRKY domain
PfamPF031064.2E-2464123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MASRHQLQTM QFMDQASRSR SPRPDGVHGP PPPTPMSSPF SSRKPRVQEG QPTCVNLTPI  60
PHTDGHLWRK YGEKKIKNSS FPRLYYRCSY RDDRNCMATK VVQQENDADP PLYRVTYIHT  120
HTCNPLPPAP TPASVFTEPP SAKAEHHAVL FRFSSTSGGH MANADHPAVH HQQWQPAATT  180
MVAQAHQLSM MCDDEQQAAA IRSGPPARRL SMFRAVVDGL RQMRSSAPPP SSTVVDGGWD  240
TFSSFNLDTC EFSIDDELLC GDLMYSPDSM QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-15641231068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997741e-156AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149661e-156AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-156CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.21e-148probable WRKY transcription factor 32
TrEMBLA0A0E0M6K00.0A0A0E0M6K0_ORYPU; Uncharacterized protein
STRINGOPUNC10G05310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-19WRKY DNA-binding protein 55