PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G08950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 425aa    MW: 42230.3 Da    PI: 6.1376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G08950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-092082471155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OPUNC09G08950.1 208 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 247
                      6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.554197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7207252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-12207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6208247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-8209250No hitNo description
Gene3DG3DSA:4.10.280.106.1E-12210254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MQPTTREMQA MAAAAAAAGA GQISLDDLRN GANAGGGGGG IHDDFLDQML SSLPPSAWPD  60
LAAAKAAEDD AEGMHHQQQQ QFGGPYDESA MLASRLRQHQ ISGGGGGGGG AAAVKQMVLQ  120
QLADLRQGHH MMLQGLGGRS AAGGGGDGNG GLLLPLTLGS GGSGGDVQAL LKAAAANSAG  180
GESGGVYGGG FAGSLHQQQQ HFQPHPQLRR ERIAERMKAL QELVPNANKT DKASMLDEII  240
DYVKFLQLQV LSMSRLGGAA AVAPLVADMS SEGRGGGAAN GGAPAAAAGS DSLTVTEQQV  300
AKLMEEDMGT AMQYLQGKGL CLMPISLASA ISSATCHLRP PVVAAAAAAQ QFPAGIGAAA  360
AAHHHQLSAA AAAMRGHLPG LNADGSVPAS PSMSVLTAQS AMANGGGGAD GEGSQPKDAA  420
SVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144GGRSAAGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057840.0AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799597.11e-145glycine, alanine and asparagine-rich protein-like
TrEMBLA0A0E0M1960.0A0A0E0M196_ORYPU; Uncharacterized protein
STRINGOPUNC09G08950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-52LJRHL1-like 1