PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G00580.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 191aa    MW: 20906.1 Da    PI: 10.9419
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G00580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.66e-222168249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie++  rqv fskRr+g +KKA+ELS+LC aeva ++fs+ gk y +
  OPUNC09G00580.1 21 RIESEEARQVCFSKRRAGFFKKASELSILCSAEVAAVVFSPAGKAYSF 68
                     8*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.4641272IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-311271IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-271387IPR002100Transcription factor, MADS-box
CDDcd002654.14E-391385No hitNo description
PRINTSPR004041.1E-201434IPR002100Transcription factor, MADS-box
PfamPF003193.4E-252168IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-203449IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-204970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTAAAARRRP SLGRQKIEIR RIESEEARQV CFSKRRAGFF KKASELSILC SAEVAAVVFS  60
PAGKAYSFGH PSVECLLDRF LSLPATGSGT GSASVVGELN RQYGELRAMV DAHKARRERA  120
EKQRTARSWM DPEAEVGRMA AEELVALGTK LVALQGGVAA RADQMLRDAL LVGRRPTTTR  180
APPPFFHLPH F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-1612102191MEF2C
5f28_B4e-1612102191MEF2C
5f28_C4e-1612102191MEF2C
5f28_D4e-1612102191MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057891e-172AP005789.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0563F09.
GenBankAP0058841e-172AP005884.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0598D02.
GenBankAP0149651e-172AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-172CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611069.11e-107agamous-like MADS-box protein AGL29
TrEMBLA0A0E0LYB91e-135A0A0E0LYB9_ORYPU; Uncharacterized protein
STRINGOPUNC09G00580.11e-135(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25AGAMOUS-like 61