PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G00750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 283aa MW: 29517.9 Da PI: 6.2276 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 45.5 | 1.5e-14 | 132 | 170 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ OPUNC07G00750.1 132 RKSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 170 57**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-16 | 110 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-17 | 117 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.224 | 120 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-18 | 125 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-11 | 133 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MAMEGAGDWP FAADEAYADS SAIFAELGWA NGLAVVGAVG ELLPPLDPPG EATPPPLDPP 60 ETPAGSSADG AASSCSTDDG ADGGKPVAAS TEAASKSLTP GKKGGKKRAR QPRFAFMTKS 120 EIDHLEDGYR WRKSYYRCTN SKCTVKKRVE RSSDDPSVVI TTYEGQHCHH TVTFPRGGAA 180 TGSFSHIHTM VAAAALAAPA FSAHQQLYSN LQHQPPATTM PLAAAATTPV ASPSLLQLPL 240 HCNQELQVVA SCSDYPSSSS SPASVPVDRG LLDDMVPRAM RNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-14 | 115 | 169 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-14 | 115 | 169 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240958 | 1e-140 | AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence. | |||
GenBank | AY341858 | 1e-140 | AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645717.1 | 1e-131 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A0E0LG98 | 0.0 | A0A0E0LG98_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G00750.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-44 | WRKY DNA-binding protein 57 |