PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G12080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 394aa    MW: 44646.7 Da    PI: 7.9297
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G12080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-063153326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++lC+ff+  G C  G+ C F+H+
  OPUNC06G12080.1 31 RVLCKFFMH-GACLKGEYCEFSHD 53
                     79***8888.*************5 PP
2zf-CCCH28.23.2e-096181526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C f+++ G C+yG+rC++ H+
  OPUNC06G12080.1 61 VCTFYQK-GSCSYGSRCRYDHV 81
                     5******.*************7 PP
3zf-CCCH23.78.2e-08177198426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ fa+ G C+yG+ C+ +Hg
  OPUNC06G12080.1 177 PICS-FAAAGNCPYGEECPQMHG 198
                      6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7372855IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-52954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-63153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7655683IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-45782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-55780IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-66181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-46180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69173200IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4174199IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5177198IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.7E-12230306No hitNo description
Gene3DG3DSA:3.30.40.105.4E-10235301IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00122241301No hitNo description
PROSITE profilePS5008912.297242300IPR001841Zinc finger, RING-type
PfamPF000972.3E-7242299IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.7E-7242299IPR001841Zinc finger, RING-type
PROSITE patternPS005180266275IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.0047329357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089329358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSTKRLNKGS AGVACVYSAF CRIFWFSALY RVLCKFFMHG ACLKGEYCEF SHDWNDQPNN  60
VCTFYQKGSC SYGSRCRYDH VKVSHNLTVA PPPSSSATTR ASSSLQPLSF RHPHHVGYQA  120
DSSNPRQQIS MDVLAHSGSK PVWRNDFQHE SVLEDGIDWS ISPTVQNQTT LSPADLPICS  180
FAAAGNCPYG EECPQMHGDL CTTCGKMCLH PYRPDEREEH TKLCEKNHKR LESLKRSQEI  240
ECSVCLDRVL SKPTAAERKF GLLSECDHPF CISCIRNWRN NSPTSGMDVN SALRACPICR  300
KLSYYVIPSV LWYFSKEEKL EIIDNYKAKL KSIDCKYFDF GTGTCPFGSS CFYKHAYRDG  360
RLEEVILRHL DADDGSTVIA KNIRLSDFLS RLHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236ESLKRS
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1202500.0AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643585.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0E0LB110.0A0A0E0LB11_ORYPU; Uncharacterized protein
STRINGOPUNC06G12080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-153C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]