PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G03800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 343aa    MW: 36957 Da    PI: 4.5918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G03800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18116166256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g++ AeIrd     k+ r++lg+f+taeeAa+ +++a+++l+g+
  OPUNC06G03800.1 116 KFRGVRKRP-WGKYGAEIRDSQ---KNERVWLGTFDTAEEAARVYDHAALRLRGP 166
                      89*******.**********42...46**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-29115173IPR001471AP2/ERF domain
PfamPF008472.2E-11116165IPR001471AP2/ERF domain
CDDcd000181.03E-28116172No hitNo description
SMARTSM003803.1E-36116179IPR001471AP2/ERF domain
PROSITE profilePS5103222.879116173IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-21116174IPR016177DNA-binding domain
PRINTSPR003672.8E-10117128IPR001471AP2/ERF domain
PRINTSPR003672.8E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVEVAVEKKV RKIVRGRCHV VASKDEPAAA AVAAPRVVRV ICRDHDATDS SGDDDGEDAP  60
RRASLLVHEI HVARQLAGES PAAPSSSQRR RIGPMKKRTD AAVDDATAAE VAPERKFRGV  120
RKRPWGKYGA EIRDSQKNER VWLGTFDTAE EAARVYDHAA LRLRGPSAMT NFPAPTPSPS  180
PPPLRATNAG AASGYDESSD ESQLVSSPVS VLRPMPAHAT AKKEAREEDD SAPDILSADD  240
MRGISAGENF SPFTGEILNF PPPDEDMFRG SISFGEPTPP PMVFDDDCMA RLGHIPNDDE  300
HPVTSSSFLD DELGDLPSWP EVDGFFSDVG GDDLFAAEPL PAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-231161731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.21e-140ethylene-responsive transcription factor 11
TrEMBLA0A0E0L8670.0A0A0E0L867_ORYPU; Putative Ethylene-responsive transcription factor CYTOKININ RESPONSE FACTOR4
STRINGOPUNC06G03800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-26cytokinin response factor 4