PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC05G13570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 192aa MW: 21188.3 Da PI: 8.9008 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 20.7 | 9.5e-07 | 164 | 185 | 1 | 22 |
G2-like 1 kprlrWtpeLHerFveaveqLG 22 k+r W +eLHerFv++v qLG OPUNC05G13570.1 164 KKRSTWPKELHERFVSVVLQLG 185 6899*****************6 PP | |||||||
2 | Response_reg | 55.7 | 2.9e-19 | 27 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 vl++d++ + +++++++l + gy +v+ + ++ a+e l+++ +D++l+ + p +dG++ll+ + +++lp++v++a +++ ++l++++ OPUNC05G13570.1 27 VLLIDESTTCLKIITKLLLNCGY-KVTPKTAAQNAVEELRNNPwsYDMVLTELHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVN 118 89*********************.99999999999999999999************99********9755.459******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l+Kp eel + OPUNC05G13570.1 119 SGACDYLVKPLRHEELKN 136 ***************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-32 | 24 | 153 | No hit | No description |
SuperFamily | SSF52172 | 2.13E-26 | 24 | 149 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.1E-15 | 25 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.142 | 26 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.7E-15 | 27 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.23E-16 | 28 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-5 | 164 | 187 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MVGSSSAAGG NKSKLADEEF TPVGMRVLLI DESTTCLKII TKLLLNCGYK VTPKTAAQNA 60 VEELRNNPWS YDMVLTELHA PAGIDGFNLL QYAGTDMDLP VVVFSADDDK RTVLKCVNSG 120 ACDYLVKPLR HEELKNIWQH VYRRKLRNGR RAAAAGNSSK GEIKKRSTWP KELHERFVSV 180 VLQLGVDTGL AN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC132483 | 1e-120 | AC132483.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0014C03, complete sequence. | |||
GenBank | AC134932 | 1e-120 | AC134932.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092G21, complete sequence. | |||
GenBank | AP014961 | 1e-120 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881540.1 | 1e-119 | two-component response regulator ARR11-like | ||||
TrEMBL | A0A0E0L271 | 1e-141 | A0A0E0L271_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G13570.1 | 1e-141 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17064 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31920.1 | 3e-32 | response regulator 10 |