PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G13560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 342aa MW: 37442.7 Da PI: 8.6091 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 43.7 | 5.9e-14 | 164 | 206 | 1 | 44 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 k+r W +eLHerFv++v qL G +kAtP +il l++ ++Lt++ OPUNC05G13560.1 164 KKRSTWPKELHERFVSVVLQL-GVDKATPNQILPLLNREDLTRD 206 6899*****************.********************97 PP | |||||||
2 | Response_reg | 53.7 | 1.1e-18 | 27 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 vl++d++ + +++++++l + gy +v+ + ++ a+e l+++ +D++l+ + p +dG++ll+ + +++lp++v++a +++ ++l++++ OPUNC05G13560.1 27 VLLIDESTTCLKIITKLLLNCGY-KVTPKTAAQNAVEELRNNPwsYDMVLTELHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVN 118 89*********************.99999999999999999999************99********9755.459******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l+Kp eel + OPUNC05G13560.1 119 SGACDYLVKPLRHEELKN 136 **************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.3E-32 | 24 | 153 | No hit | No description |
SuperFamily | SSF52172 | 9.82E-26 | 24 | 149 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.1E-15 | 25 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.142 | 26 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.3E-14 | 27 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.54E-15 | 28 | 141 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-5 | 164 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-12 | 164 | 207 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-10 | 164 | 207 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVGSSSAAGG NKSKLADEEF TPVGMRVLLI DESTTCLKII TKLLLNCGYK VTPKTAAQNA 60 VEELRNNPWS YDMVLTELHA PAGIDGFNLL QYAGTDMDLP VVVFSADDDK RTVLKCVNSG 120 ACDYLVKPLR HEELKNIWQH VYRRKLRNGR RAAAAGNSSK GEIKKRSTWP KELHERFVSV 180 VLQLGVDKAT PNQILPLLNR EDLTRDQRFR IAITKSKTLP SWSTIPIGGT VHGIPLALQT 240 IGTENNQHLI VPFNWITFVR PRGVDEIGQN GVLGGLVTGN NTIVPTATSV LAKAFGRDMV 300 NGADLSDHGT LIRDSSSTND DGAQNELGET NLAFELMEKK GK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 1e-142 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881540.1 | 1e-118 | two-component response regulator ARR11-like | ||||
TrEMBL | A0A0E0L270 | 0.0 | A0A0E0L270_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G13560.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17064 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 1e-39 | response regulator 10 |