PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G05640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 395aa    MW: 42318.4 Da    PI: 7.4316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G05640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08166186526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C FaHg
  OPUNC05G05640.1 166 ACPDFRK-GGCKRGDACEFAHG 186
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013161187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159162188IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-7166186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5166188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGLSAASPPF PVYHGGWIAA ATRTNTRLAG VGEERREVEG KMMMMGEGAH APPWQHVASP  60
VSGVEGGGGG GGRDSEVVAA PYHLLDALRH YLPSNEAAAA AEDEEEAAAV AAAVDAYACD  120
EFRMYEFKVR RCARGRSHDW TECPFAHPGE KARRRDPRRY CYSGTACPDF RKGGCKRGDA  180
CEFAHGVFEC WLHPARYRTQ PCKDGTACRR RSYDGSPLRR QAFESYLTKS VMSSSPTSTL  240
VSPPRSPPSE SPPLSPDAAG ALRRGSWTGV GSPVNDVLVS LRQLRLGSPR SAPSCASFLS  300
AGYQYGSPKS PAAAAALYSL PSTPTRPSPV TVTTASGATV TVEPLDLGLI EEEQPMERVE  360
SGRALREKVF ERLSKEATVS TDAAPDVGWV SDLIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324860.0AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAK1063920.0AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0E0KZG40.0A0A0E0KZG4_ORYPU; Uncharacterized protein
STRINGOPUNC05G05640.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.16e-68C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]