PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G18700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 312aa MW: 32722.3 Da PI: 7.6909 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H OPUNC04G18700.1 5 TCKLCSRRFGNPRALAGHMRSH 26 6********************9 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00088 | 173 | 195 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H OPUNC04G18700.1 173 FQCPACKKVFRSYQALGGHRASH 195 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.473 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 0.001 | 5 | 26 | No hit | No description |
SuperFamily | SSF57667 | 1.19E-7 | 5 | 26 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.19E-7 | 168 | 195 | No hit | No description |
Pfam | PF13912 | 1.3E-11 | 172 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 173 | 195 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 88 | 237 | 257 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-9 | 237 | 258 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAKNTCKLCS RRFGNPRALA GHMRSHSVAA ARSQISSTSS ASTSVAVGDD DGGDAKRPIQ 60 GYVLREKPKR RVRLAESDFS DRESETEYYS SPPHGKRANT GSGDVEQVSS VSDAATSEED 120 VALSLMMLSR DTWPATPPPS YRLRGAGYDD GSDGGDAPPP APTAVAGQKR TRFQCPACKK 180 VFRSYQALGG HRASHMRGGR GGCCAPPPNP PPSPATPLQP LPECDGGEEE GAKPHPHECP 240 YCFRVFASGQ ALGGHKRSQL CSAAAVAAAA SGDDLPATIK SNGFIDLNLP APFDDVELSA 300 VSDPFLTSKP GS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 72 | KPKRRVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121993 | 0.0 | AK121993.1 Oryza sativa Japonica Group cDNA clone:J033109L03, full insert sequence. | |||
GenBank | AL606633 | 0.0 | AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652618.1 | 1e-159 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A0E0KTN0 | 0.0 | A0A0E0KTN0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G18700.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-30 | C2H2-like zinc finger protein |