PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 573aa    MW: 60176.7 Da    PI: 5.9657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05115132219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  OPUNC04G18690.1 115 VCKNCGKEFTSWEHFLEH 132
                      7**************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.962547IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.73E-62547No hitNo description
PROSITE profilePS501579.5362547IPR007087Zinc finger, C2H2
PfamPF139120.00472647IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-6109133No hitNo description
PROSITE profilePS501579.141114141IPR007087Zinc finger, C2H2
SMARTSM00355140114134IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.04E-7274297No hitNo description
PfamPF139123.2E-9275299IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242275302IPR007087Zinc finger, C2H2
SMARTSM003550.13275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-7384411No hitNo description
PfamPF139124.8E-11389412IPR007087Zinc finger, C2H2
SMARTSM003553.7389411IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743389425IPR007087Zinc finger, C2H2
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MHMQPSPSPP RAPPPTAAQA SRYKHFCRVC NKGFTCGSAL GGHMRAHGVG DGDGLGADDD  60
DDDDDDDSLG DEAVRRARGG ADDPWNAGGP SSSGAGTHVY ALRTNPNRIT RSRQVCKNCG  120
KEFTSWEHFL EHGKCSSGED DDDDEDADRS LQPWSPSPEA DGEEDPAPAA GWSKGKRSRR  180
CKGTGFDLSP TPSACAAGEE EDLANCLVML SSSKVDQAGV TEAEQPSSAS VSKEHKRLIT  240
FMEPTTYALD KVMALPPPAL APAPQYVSPV PRGMFECKAC KKVFSSHQAL GGHRASHKKV  300
KGCFAAKLDS NVGEPSHHPE VSDRNEDNPS KVIVNATSDA RRNVDASMDG DVNAGTRDAA  360
AELSMAIVPI EPPVAALATA PMKKKGKMHE CSVCHRLFTS GQALGGHKRC HWLTSSSADH  420
TGSVPPLADD LVVTACHPLS FRPMLDAPEP ALNLSIAANP PALASAATIR PKAGGSSFHL  480
DAPPPVYIPS PAIPSNAIAS QRNKATATTG SQNANDAVGL RTAAAEDEAD STTVKRARLS  540
DLKDVSMAGE TTPWLQVGIG SSSHGVGDDN DKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0E0KTM90.0A0A0E0KTM9_ORYPU; Uncharacterized protein
STRINGOPUNC04G18690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-19C2H2-like zinc finger protein