PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G18690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 573aa MW: 60176.7 Da PI: 5.9657 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 115 | 132 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ H OPUNC04G18690.1 115 VCKNCGKEFTSWEHFLEH 132 7**************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.96 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.73E-6 | 25 | 47 | No hit | No description |
PROSITE profile | PS50157 | 9.536 | 25 | 47 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0047 | 26 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.73E-6 | 109 | 133 | No hit | No description |
PROSITE profile | PS50157 | 9.141 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 114 | 134 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.04E-7 | 274 | 297 | No hit | No description |
Pfam | PF13912 | 3.2E-9 | 275 | 299 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.242 | 275 | 302 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 275 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 277 | 297 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.04E-7 | 384 | 411 | No hit | No description |
Pfam | PF13912 | 4.8E-11 | 389 | 412 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 389 | 411 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 389 | 425 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 391 | 411 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MHMQPSPSPP RAPPPTAAQA SRYKHFCRVC NKGFTCGSAL GGHMRAHGVG DGDGLGADDD 60 DDDDDDDSLG DEAVRRARGG ADDPWNAGGP SSSGAGTHVY ALRTNPNRIT RSRQVCKNCG 120 KEFTSWEHFL EHGKCSSGED DDDDEDADRS LQPWSPSPEA DGEEDPAPAA GWSKGKRSRR 180 CKGTGFDLSP TPSACAAGEE EDLANCLVML SSSKVDQAGV TEAEQPSSAS VSKEHKRLIT 240 FMEPTTYALD KVMALPPPAL APAPQYVSPV PRGMFECKAC KKVFSSHQAL GGHRASHKKV 300 KGCFAAKLDS NVGEPSHHPE VSDRNEDNPS KVIVNATSDA RRNVDASMDG DVNAGTRDAA 360 AELSMAIVPI EPPVAALATA PMKKKGKMHE CSVCHRLFTS GQALGGHKRC HWLTSSSADH 420 TGSVPPLADD LVVTACHPLS FRPMLDAPEP ALNLSIAANP PALASAATIR PKAGGSSFHL 480 DAPPPVYIPS PAIPSNAIAS QRNKATATTG SQNANDAVGL RTAAAEDEAD STTVKRARLS 540 DLKDVSMAGE TTPWLQVGIG SSSHGVGDDN DKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634601.1 | 0.0 | uncharacterized protein LOC4336604 | ||||
TrEMBL | A0A0E0KTM9 | 0.0 | A0A0E0KTM9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G18690.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 3e-19 | C2H2-like zinc finger protein |