PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G02120.1
Common NameP26-2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 348aa    MW: 35691.4 Da    PI: 6.1115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G02120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081247269123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  OPUNC04G02120.1 247 HECSICGAEFASGQALGGHMRRH 269
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.9E-11140165IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-8140163No hitNo description
SMARTSM003550.24141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-8242269No hitNo description
PfamPF139121.5E-12246270IPR007087Zinc finger, C2H2
SMARTSM003550.016247269IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263247274IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAAVV TMAASAATAA EESMESSLSL SGGAAAAVAA  60
EGSSTTSPLM TTTARGDEAV SGCVTEEEED MALCLMLLAS GGHGERARDG GEEEAVVAAA  120
KEAKFRSRRP ADGAAAGEFV YECKTCSKCF PSFQALGGHR TSHKKPRLIA PPATTEQAAD  180
DKIKPAIPET PAAEEKPPKP SPPRPPASRP IATDPTVLAI PVIPKQEVVD TTNAAAIASI  240
SKQPRVHECS ICGAEFASGQ ALGGHMRRHR PLIPASASSA SAVSVLDAVD APRQKEKSLL  300
ELDLNMPAPC DEAAAETTSS AATSPAFAFA VNDRSPLLVP AALVGCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336970.0CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.11e-138zinc finger protein ZAT5
TrEMBLA0A0E0KMM40.0A0A0E0KMM4_ORYPU; ZOS4
STRINGOPUNC04G02120.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-27C2H2 family protein