PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G32210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 27433.8 Da PI: 8.4017 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.6e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksFs+ L H +H OPUNC03G32210.1 90 FKCSVCGKSFSSYQALGGHKTSH 112 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 159 | 181 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r+H OPUNC03G32210.1 159 HRCSICQKEFPTGQALGGHKRKH 181 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.03 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-12 | 90 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0046 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.47E-10 | 90 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 90 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.47E-10 | 154 | 181 | No hit | No description |
Pfam | PF13912 | 4.9E-12 | 158 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.078 | 159 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 159 | 181 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 161 | 181 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSASSMEAL HAAVLKEEEH QHEVVTSSSA TSGEEGGHLP QGWAKRKRSR RQRSEEENLA 60 LCLLMLARGG HHRVQAPPPL SAPPPAGAEF KCSVCGKSFS SYQALGGHKT SHRVKLPTPP 120 APPVLAPAPV AALLPSAEDR EPATSSTAAS SDGTTNRVHR CSICQKEFPT GQALGGHKRK 180 HYDGGAAAGA SSTELLATVA AESEVGSSGN GHSAARAFDL NLPAVPEFVW RPCSKGKKMW 240 DDEEEVQSPL AFKKPRLLTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC090713 | 0.0 | AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633313.1 | 1e-134 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-117 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0E0KJD6 | 0.0 | A0A0E0KJD6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G32210.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 5e-32 | salt tolerance zinc finger |