PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G31830.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 325aa    MW: 33409.2 Da    PI: 5.8153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G31830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.8e-33138195259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  OPUNC03G31830.1 138 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 195
                      8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33122196IPR003657WRKY domain
SuperFamilySSF1182901.57E-28129196IPR003657WRKY domain
PROSITE profilePS5081129.964132197IPR003657WRKY domain
SMARTSM007748.6E-39137196IPR003657WRKY domain
PfamPF031064.6E-26138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGAAGGREE GVGGGGGGGE WSPFDGDAFA EYSSAVLAEL GGWAAGGGMM MPALDLAEDV  60
MGTAAARSEE EAPARSGDGA AAASSSSSGE PTAPEIADKQ PAAAEAAPAA GATAKKGQKR  120
ARQPRFAFMT KSEIDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTNSKCTV KKRVERSSDD  180
PSVVITTYEG QHCHHTASFQ RGVGGAAVAA HIHGAAAVAL AEQMSAFVSA PQPLAPPPPH  240
MLYSLPRLHP PSSSETVVSS MPTTSLQELN NGEGLQHPGY SPQAAVTIAQ PSPSPSSSVP  300
PAVSFDKGLL DDIVPPGTCL PTLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25128194874Probable WRKY transcription factor 4
2lex_A1e-25128194874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418590.0AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690361.11e-136PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 57
TrEMBLA0A0E0KJ800.0A0A0E0KJ80_ORYPU; Uncharacterized protein
STRINGOPUNC03G31830.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-48WRKY DNA-binding protein 57