PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G30000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 543aa MW: 57049.3 Da PI: 7.2144 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.2e-24 | 163 | 207 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OPUNC03G30000.1 163 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 207 79****************************************986 PP | |||||||
2 | QLQ | 57.5 | 4e-20 | 97 | 133 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ OPUNC03G30000.1 97 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 133 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 97 | 133 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.1E-15 | 98 | 132 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.087 | 98 | 133 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 163 | 207 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-20 | 164 | 206 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDLGGGVGAA AAAVSEAVKV AAPFLLGASC SPGHGGEQML SFSSSPSSCS SGGGAAVAAA 60 AAGGAMPLYY GTPASCSGLS SVSLSSSMQG AIARVRGPFT PSQWIELEHQ ALIYKYLAAN 120 SPVPHSLLIP IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS 180 RDAVADQKYC ERHMNRGRHR SRKHVEGQPG HAAKAMPAAV AAAAASATQP SAPAAQSGGG 240 VAGLAINHQQ QQMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSMSTRNTG 300 SLFPFSKQHN PFEVTNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQGLNE QQSSVSLQHF 360 VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE 420 YSPIGLGSAA NRDEVNQGET NWTPMFRDSL MGGPLGEVLT KNNNMEARNC LSASLNLLND 480 GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI 540 RLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073578 | 0.0 | AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628630.1 | 0.0 | growth-regulating factor 6 | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A0E0KIJ7 | 0.0 | A0A0E0KIJ7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G30000.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-49 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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