PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G01600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 304aa    MW: 32322.8 Da    PI: 8.4015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G01600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14107158155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  OPUNC03G01600.1 107 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 158
                      79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1598165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-14105161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-12105158No hitNo description
PROSITE profilePS5088815.142106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKQWAVEQAA ASTGAGQMPF LALLQGAMEA DGGGCDGRKR HAAAFASCPC PPVADLDLLE  60
SCVTQAAAPP VTAPATRAER RRKRPRPRPR AAPPPEKRKK PEEAENQRMT HIAVERNRRR  120
LMNDHLASLR SLIPSNYIPR GDQATVVGGA IDYVKQLEQQ LVALQAAAAE RSGVGLVATA  180
ATAASDSVFV SPQYTSYSEA RGSSGVDVEA TGAVGGHVRV RVAGRRWTGR LVRAVAAMED  240
LRLTVLHLAV TSVGHDAVVY CFNLKVNNDN SSSPLLMEEG CEMATADEVA TVVHQIFAYA  300
GACC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17989RRRKRPRPRPR
28187RKRPRPR
38199RKRPRPRPRAAPPPEKRKK
48286KRPRP
5107118RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175780.0AC217578.2 Oryza punctata clone OP__Ba0012M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.21e-134transcription factor bHLH57
TrEMBLA0A0E0K8280.0A0A0E0K828_ORYPU; Uncharacterized protein
STRINGOPUNC03G01600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-36bHLH family protein