PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G18120.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 344aa    MW: 38889.4 Da    PI: 7.6277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G18120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000196789323
                     ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                     C+   Cgk+F +   L++H  +H
  OPUNC02G18120.1 67 CSydGCGKTFVDAGALRKHAHVH 89
                     78889**************9887 PP
2zf-C2H215.55e-0594118123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   C+k F ++s LkrH   H
  OPUNC02G18120.1  94 YVCHyaGCDKKFLDSSKLKRHFLIH 118
                      9********************8877 PP
3zf-C2H221.94.7e-07124148123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk Fs   nLk H++tH
  OPUNC02G18120.1 124 FVCPheGCGKAFSLDFNLKAHMKTH 148
                      89**********************9 PP
4zf-C2H213.40.00023154179123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   C ++F++ s L+ Hi+  H
  OPUNC02G18120.1 154 HVCKypECARRFTQESKLRAHIKQqH 179
                      789999****************9877 PP
5zf-C2H212.10.00061222247123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   C k + + + L+ H+++ H
  OPUNC02G18120.1 222 YVCPydGCAKAYIHEYKLNLHLKKeH 247
                      99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.0E-146091IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00186589IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9286594IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-66690No hitNo description
PROSITE patternPS0002806789IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-1392114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003294118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.15294123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-14105157No hitNo description
Gene3DG3DSA:3.30.160.602.6E-20115149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321124153IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4124148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-6150177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.049154179IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118154179IPR007087Zinc finger, C2H2
PROSITE patternPS000280156179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-8214244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.47E-5218245No hitNo description
PROSITE profilePS501578.85222252IPR007087Zinc finger, C2H2
SMARTSM003550.012222247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMQAAGRGAR HRWVKEWVPQ DLVVAGGPCA LYKWVREDRL SAFKSRDKEQ EAELAKPEPT  60
TEVLFLCSYD GCGKTFVDAG ALRKHAHVHG ERQYVCHYAG CDKKFLDSSK LKRHFLIHTG  120
EKNFVCPHEG CGKAFSLDFN LKAHMKTHSA DNYHVCKYPE CARRFTQESK LRAHIKQQHE  180
KGGLQNPGGS ATNRSGLEDH SHNSHTPKPS AAPPAPSADR PYVCPYDGCA KAYIHEYKLN  240
LHLKKEHPNH YQDAGAQAAS SKMSKRRNKP VLTAKMPLPK VPKRRGYTAP YQPPVSVVEE  300
HQWPRNVLYE DDSEETEEEG DNVEDGARYR AASSDDDEET EDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-33671758114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284PKVPKRR
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1037600.0AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627689.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-101YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0E0K0Z70.0A0A0E0K0Z7_ORYPU; Uncharacterized protein
STRINGOPUNC02G18120.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-99C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]