PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G17590.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 399aa MW: 45867.2 Da PI: 6.9192

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G17590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.1	3.5e-21	86	181	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 +W+ ++v++L+ a+ +++e++ + ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++ +++ + OPUNC02G17590.1 86 KWSSDMVKLLVSAVAYIDEDVDMDYgtgsarrkhamlKRKGKWKLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQIVEHPEL 179 7************888888754233446677888899*****************************************953776666665 PP trihelix 82 fd 83 ++ OPUNC02G17590.1 180 LE 181 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-20	84	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGDFSGGEGI RIWKKKLLSL VLMQQPPPFH FAQDPHLHHQ GMVPVRGNPM LDLGNVVKTS 60 LSDEEDVDDG HHHGGGGGGG QWHRVKWSSD MVKLLVSAVA YIDEDVDMDY GTGSARRKHA 120 MLKRKGKWKL VSAAMTERGF PVSPQQCEDK FNDLNKRYKR MTEILGRGTA CQIVEHPELL 180 EGMRLSGKLK EEARKHLSSK HLHYEEMCSY HNRNKMCLLD DPTLQKSLRL ALRSGEEHVK 240 KNPFGYDDED FSDDDDEDED FDDLEVSAED HHHGIHGSKR LKHDQEETHF GSNLSEVAVI 300 DMNKMLSEGS GGPTAEKSPS TPGMCDIRLE KRRLKIKAQM LKIEQKHFKW LRFSKEKDRE 360 LEKMRLDNEK MKLENERLEL ELKLKEIEMG IKPKKIFRD

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGDFSGGEGI RIWKKKLLSL VLMQQPPPFH FAQDPHLHHQ GMVPVRGNPM LDLGNVVKTS  60
LSDEEDVDDG HHHGGGGGGG QWHRVKWSSD MVKLLVSAVA YIDEDVDMDY GTGSARRKHA  120
MLKRKGKWKL VSAAMTERGF PVSPQQCEDK FNDLNKRYKR MTEILGRGTA CQIVEHPELL  180
EGMRLSGKLK EEARKHLSSK HLHYEEMCSY HNRNKMCLLD DPTLQKSLRL ALRSGEEHVK  240
KNPFGYDDED FSDDDDEDED FDDLEVSAED HHHGIHGSKR LKHDQEETHF GSNLSEVAVI  300
DMNKMLSEGS GGPTAEKSPS TPGMCDIRLE KRRLKIKAQM LKIEQKHFKW LRFSKEKDRE  360
LEKMRLDNEK MKLENERLEL ELKLKEIEMG IKPKKIFRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004877	0.0	AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627648.1	0.0	uncharacterized protein LOC4329598
TrEMBL	A0A0E0K0U0	0.0	A0A0E0K0U0_ORYPU; Uncharacterized protein
STRING	OPUNC02G17590.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-63	sequence-specific DNA binding transcription factors