PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G13570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 339aa    MW: 37566.5 Da    PI: 6.1785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G13570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-114089154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r++ +  rE+ RRdr+N+ f+eL + l ++     ++++Ka+iL  A++ +k+L
  OPUNC02G13570.1 40 RKVQKADREKMRRDRLNEQFQELGSTLDPD----RPRNDKATILGDAIQMLKDL 89
                     5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1483989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1339112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-84089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-74093No hitNo description
SuperFamilySSF474597.98E-1440109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-84595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDPRSHQAQE DGFFHPRDSA CPADSSGRTE CKTQGSIVTR KVQKADREKM RRDRLNEQFQ  60
ELGSTLDPDR PRNDKATILG DAIQMLKDLT SQVNKLKAEY TSLSEEAREL TQEKNELRDE  120
KASLKFEVDN LNTQYQQRMR VLYPWTGMEP SVVIGPPPPY PFSVPVPIPS GAVPMHPQLQ  180
AYPYFRNQTS GTVPNPCTPY MAYTQPIHPP TDQLSNQFSA PVQHSCSNRS HSLAQDCRSK  240
SSALQQVSCR GKHDDFDDVA TDLELKTPGS SAPLQSEIAN KESSSDLKKK QKFIQETKGS  300
SLTEGSSSSS RCSSSGPPDV SNSVEDGSVA DDQRSTVQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626280.10.0transcription factor bHLH121 isoform X1
SwissprotQ9LT231e-67BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0E0JZD60.0A0A0E0JZD6_ORYPU; Uncharacterized protein
STRINGOPUNC02G13570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-68bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]