PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G29800.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 258aa MW: 28072.5 Da PI: 7.0994

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G29800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.2e-32	179	237	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ OPUNC01G29800.1 179 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 237 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	165	237	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-29	171	238	IPR003657	WRKY domain
PROSITE profile	PS50811	28.885	174	239	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	179	238	IPR003657	WRKY domain
Pfam	PF03106	4.4E-26	180	237	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MENLQLQGDD HDDEAHAATA LPDHFPYFAV PPPPPLAVAP AASATSDDQQ HVPLEALEAP 60 PCNHRPGSLV DGPQLAAATT AVPMMLPAMT SLDWQSLLQT CLQVPPPVLE QQQAAAAADQ 120 YSGGNDHGNM QVAESSGDGA GNKEKQVMAK GGAGRSSGTK KKASRPRFAF QTRSDNDILD 180 DGYRWRKYGQ KAVKNSKHPR SYYRCTHHTC NVKKQVQRLA KDTSIVVTTY EGVHNHPCEK 240 LMEALTPILK QLQFLSQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	169	236	7	74	Probable WRKY transcription factor 4
2lex_A	3e-24	169	236	7	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108909	0.0	AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBank	AY341845	0.0	AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBank	AY870607	0.0	AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876574.1	1e-140	probable WRKY transcription factor 24
TrEMBL	A0A0E0JNN5	0.0	A0A0E0JNN5_ORYPU; Uncharacterized protein
STRING	OPUNC01G29800.1	0.0	(Oryza punctata)
STRING	OPUNC01G29830.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	8e-58	WRKY DNA-binding protein 24