PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G24490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 334aa    MW: 36225.7 Da    PI: 8.384
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G24490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15260285126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG C+yGd+C+FaHg
  OPUNC01G24490.1 260 FKTELCNKWEETGDCPYGDQCQFAHG 285
                      79***********************9 PP
2zf-CCCH18.92.8e-06298323126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ Cr  +++  C+yG rC+F H+
  OPUNC01G24490.1 298 YKTAVCRMVLAGDVCPYGHRCHFRHS 323
                      9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-18254292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10256291IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9259286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413259287IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-12260285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-11293323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8293325IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009297325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQEALVSPVR SALELKPFAF GDQRLASSPR YLPSGDDALY RCSSPFSPSF GFSSPSPLAT  60
SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAEAAEEA  120
AALRRENAEL RVTNSDLARR LALLSGKHTA AVAVADEIRR LRLGEQKVAA ATKERTPEKL  180
AVLPKSISVR STSYLKLNQQ SQAGVTPAAP NRKPRTSSNP TNPSSVSQRA YDDGGKKGNE  240
QKQQPADGGA ELEVYNQGMF KTELCNKWEE TGDCPYGDQC QFAHGVAELR PVIRHPRYKT  300
AVCRMVLAGD VCPYGHRCHF RHSLTPAERL LLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22260323467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086580.0AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646144.11e-180PREDICTED: zinc finger CCCH domain-containing protein 9
SwissprotA2ZVY51e-177C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A0E0JLQ70.0A0A0E0JLQ7_ORYPU; Uncharacterized protein
STRINGOPUNC01G24490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-51C3H family protein