PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 250aa    MW: 26829.8 Da    PI: 6.962
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30143201159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+ +d ++v++tY g Hnh+
  OPUNC01G20950.1 143 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERAWDDARFVVTTYDGVHNHP 201
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32130203IPR003657WRKY domain
SuperFamilySSF1182904.97E-28136203IPR003657WRKY domain
PROSITE profilePS5081132.73138203IPR003657WRKY domain
SMARTSM007742.8E-36143202IPR003657WRKY domain
PfamPF031061.1E-23144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSSYSSLLS LSRTEHRQVG AGYAGEEEDD DDMAAVADAV SSYLSFDMDD VVGEEYYTPE  60
VDFHSKQHTS PPPVAAAPLE AGGGREQSRR EAVVLSSPGL AVNHGKIDKG GPAPASGGAG  120
TGVPRSKNGS KIAFKTRSEV DVLDDGYRWR KYGKKMVKNS PNPRNYYRCS SEGCRVKKRV  180
ERAWDDARFV VTTYDGVHNH PAPLHPRPLL PGGYSIAGAP AVGAHRLGLE EAEVIALFRS  240
TTAATSLQLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-26133203777Probable WRKY transcription factor 4
2lex_A5e-26133203777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085221e-170AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418461e-170AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
GenBankCT8313671e-170CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.11e-115WRKY transcription factor SUSIBA2
TrEMBLA0A0E0JKH10.0A0A0E0JKH1_ORYPU; Uncharacterized protein
STRINGOPUNC01G20950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-33WRKY DNA-binding protein 50