PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G09340.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 401aa MW: 42546.4 Da PI: 4.8225

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G09340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.1	3.5e-30	80	180	2	96
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk...aksgkepsfskehdqkif 89 lfqrlw++e e+++L+G++df++++g+ +++ d+ fy+ +++++sf+++k+ql+eK+rrLKkK++ + ++ +++g ++f+++h+ i+ OPUNC01G09340.1 80 LFQRLWTDEEELLILRGFLDFTTRRGTtfASHQyDTGPFYDEIRRRLSFDFTKNQLIEKLRRLKKKYRLCAARmaaSSQGGGFAFRSAHEAAIY 173 79**********************99877778******************************99999777789999******** PP DUF573 90 elskkiW 96 +l++ iW OPUNC01G09340.1 174 DLARHIW 180 ***** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.2E-28	81	180	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MADDEPTAAA AASHSSPSSS PADEDDEEGT NSDGSNPDHD AAPHHPPPHP PEPTGAIPPP 60 PPPSPPPPPP GAGAEDSRRL FQRLWTDEEE LLILRGFLDF TTRRGTTFAS HQYDTGPFYD 120 EIRRRLSFDF TKNQLIEKLR RLKKKYRLCA ARMAASSQGG GFAFRSAHEA AIYDLARHIW 180 PPALKRDGTA SDEDDINPAA AAATATAAVT TPGAMEDGFS GSATAPASTP TPTPRGRGGR 240 RVRRRMAHEQ ETPALPSTPA LISTDGANQE PLVAAMENSI PLIAQLPPVS ETAQIPVTAN 300 GANEEAVRSI LSPLLKEFIS SFAVAGQTGP GMGLNMGFGG AGLNADIAGL GFGIAGLNPG 360 VPDVDKWRQQ QILELEVYLK RIELVREQVT AALDELRSSE G

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MADDEPTAAA AASHSSPSSS PADEDDEEGT NSDGSNPDHD AAPHHPPPHP PEPTGAIPPP  60
PPPSPPPPPP GAGAEDSRRL FQRLWTDEEE LLILRGFLDF TTRRGTTFAS HQYDTGPFYD  120
EIRRRLSFDF TKNQLIEKLR RLKKKYRLCA ARMAASSQGG GFAFRSAHEA AIYDLARHIW  180
PPALKRDGTA SDEDDINPAA AAATATAAVT TPGAMEDGFS GSATAPASTP TPTPRGRGGR  240
RVRRRMAHEQ ETPALPSTPA LISTDGANQE PLVAAMENSI PLIAQLPPVS ETAQIPVTAN  300
GANEEAVRSI LSPLLKEFIS SFAVAGQTGP GMGLNMGFGG AGLNADIAGL GFGIAGLNPG  360
VPDVDKWRQQ QILELEVYLK RIELVREQVT AALDELRSSE G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644705.2	1e-156	probable transcription factor At3g04930
TrEMBL	A0A0E0JGE1	0.0	A0A0E0JGE1_ORYPU; Uncharacterized protein
STRING	OPUNC01G09340.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-24	DNA-binding storekeeper protein-related transcriptional regulator