PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G08680.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 433aa MW: 45365.1 Da PI: 5.9112

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G08680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88	9e-28	211	265	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ OPUNC01G08680.1 211 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 265 5689***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.104	208	267	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-26	209	268	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-18	209	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-26	211	265	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	214	263	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SSADVVDEVD AFIVDDSLLE YIDFSCCDVP 60 FFHADDGDIL PDLEVDPTEL LAEFASSPDE EPQQTSAASP GEAAAASGAK EDVKQGETTA 120 ADYDGSPSPP PGKKKDNEER SSSLLEEKDG KNGGATDEVL SAVTTEDSSA AAGCDGAAKS 180 SSPSAEGHSK RKPSSSSSSA AAGKNSHGKR KVKVDWTPEL HRRFVQAVEQ LGIDKAVPSR 240 ILELMGIECL TRHNIASHLQ KYRSHRKHLM AREAEAASWT QKRQMYTAAA AVAAGGGPRK 300 DAAATAAVAP WAARKWGPQA VTPGTPCMPP PLPPAAMLQR FPVPPVPGMV PHPMYRPIPP 360 PLPPQGNKLA ALQLQLDAHP SKESIDAAIG DVLVKTWLPL PLGLKPPSLD SVMSELHKQG 420 IPKVPPAASG GAG

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SSADVVDEVD AFIVDDSLLE YIDFSCCDVP  60
FFHADDGDIL PDLEVDPTEL LAEFASSPDE EPQQTSAASP GEAAAASGAK EDVKQGETTA  120
ADYDGSPSPP PGKKKDNEER SSSLLEEKDG KNGGATDEVL SAVTTEDSSA AAGCDGAAKS  180
SSPSAEGHSK RKPSSSSSSA AAGKNSHGKR KVKVDWTPEL HRRFVQAVEQ LGIDKAVPSR  240
ILELMGIECL TRHNIASHLQ KYRSHRKHLM AREAEAASWT QKRQMYTAAA AVAAGGGPRK  300
DAAATAAVAP WAARKWGPQA VTPGTPCMPP PLPPAAMLQR FPVPPVPGMV PHPMYRPIPP  360
PLPPQGNKLA ALQLQLDAHP SKESIDAAIG DVLVKTWLPL PLGLKPPSLD SVMSELHKQG  420
IPKVPPAASG GAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-16	216	267	6	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834042	0.0	CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBank	CT834044	0.0	CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615905.1	1e-144	probable transcription factor GLK2 isoform X1
Swissprot	Q5NAN5	1e-145	GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBL	A0A0E0JG61	0.0	A0A0E0JG61_ORYPU; Uncharacterized protein
STRING	OPUNC01G08680.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-45	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]