PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G16880.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 389aa    MW: 41295.1 Da    PI: 4.8784
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G16880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.35.5e-2971173296
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqk 87 
                      lfqrlw++e e+++L+G++df+a++g+   +++ d+  fy+ +++++sf+++ksqlveK+rrLKkK++ + ++      +    ++f+++h+  
  ONIVA11G16880.1  71 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGA 164
                      79************************99877778***********************************99996666556677889******** PP

           DUF573  88 ifelskkiW 96 
                      i++l++ iW
  ONIVA11G16880.1 165 IYDLARHIW 173
                      ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-2772173IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAADELAASA SHSSSSSPAD EDDEEGTDSD GSNPDHAAAP HAPPEPTAAI PPPPPPPPPQ  60
PGPGAEDSRR LFQRLWTDEE ELLILRGFLD FTARRGTTFA SHQYDTGPFY DEIRRRLSFD  120
FTKSQLVEKL RRLKKKYRLC AARMASSPHA AAAGFAFRTP HEGAIYDLAR HIWPPALKRD  180
GTASDDDDIN PAAAAAAAAA VTTPVAMEDG FGGSAPTPTP TPRGRGGRRV RRRMAQEQEA  240
AALPSAPALT STDGAHQEPL VAAMENSFPQ ITQLPPVSET SPMPVTANGA NEEAVRSVLS  300
PLLKEFITSF AVAGQTGPGM GLNMGFGGAG LNADIAGLGF GIAALNPGVP GTDRWRQQQI  360
LELEVYLKRI ELVREQVTAA LDELRSSEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644705.20.0probable transcription factor At3g04930
TrEMBLA0A0E0J3950.0A0A0E0J395_ORYNI; Uncharacterized protein
STRINGONIVA11G16880.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-19DNA-binding storekeeper protein-related transcriptional regulator