PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G18980.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 219aa    MW: 22010.7 Da    PI: 8.3756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G18980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014136158123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C ++F++   L  H r+H
  ONIVA07G18980.1 136 HRCSICLRTFPSGQALGGHKRLH 158
                      79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.06386108IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.5E-786158No hitNo description
PROSITE profilePS501579.80686113IPR007087Zinc finger, C2H2
PfamPF139123.7E-1386110IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139121.2E-12135160IPR007087Zinc finger, C2H2
SMARTSM003550.27136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162136158IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MALDGKPPVP PPSTPPMDSW ACGGRRSKRR GGGGGSSGSS GSSGGGGGGE SEEYLAACLL  60
MLAHGVRDEA EVVGVAAATA KPQHGYECSV CGKVYGSYQA LGGHKTSHRK PPSPAAEPAA  120
GEEPSSGGVA GEAKVHRCSI CLRTFPSGQA LGGHKRLHYE GGAVGDAVKE KNSLKTKAAV  180
ATAVLKDFDL NLPAAATTAG DEAESSPPEA KRARLLLLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647209.11e-109zinc finger protein 1
TrEMBLA0A0E0I3091e-153A0A0E0I309_ORYNI; Uncharacterized protein
STRINGONIVA07G18980.11e-154(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.16e-28C2H2 family protein