PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G23670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 492aa MW: 53733.5 Da PI: 6.5101 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83 | 6.2e-26 | 20 | 157 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 +GfrF+P++ e v +yL ++++g++ + +i ++y++ P++L + ++e+ wyf s+rd+ky++gkr++r+t+ +g+Wk +tg ONIVA05G23670.1 20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFAPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 113 7************************7666779999**********733455532233777********************887679****5466 PP NAM 88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++++ g ++ + ++Lv++kg ++ +kt+W+m e+++ ONIVA05G23670.1 114 KtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157 64435678777888999**********99999**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.434 | 18 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-29 | 19 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-15 | 20 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFA 60 PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP 120 ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQRQLD 180 QYVLCRIYTS PKKGADDGEQ AEVVRGGGGE DIDEWAEACA VFDLGPETAE GSDNADAAAA 240 EGDMRSAKQA GKRPVAAAAV AEQPSKRPWL PPSPSTPCDG GPSQAMGNRQ VPMQGLSLMH 300 NFPPPPTTFC GHAPLQQGFP VHNNRAQMRW PTMQHNCMPS PAHSFQPRPV QRRPVLVGQA 360 PPQRGPVHHV GGHAPMHMHQ AQWTPVHIAQ APMQQLPFDD WVFDPFDDPP PPMQQLPVMM 420 NNYQPQAPMQ LPPMMNNDQP AMVHGGELQA PMQLLPATTH GGEVQAPMPL NVYEEEQRPS 480 QEDGGQCTNA EG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-15 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-15 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-15 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-15 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-15 | 21 | 188 | 20 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-15 | 21 | 188 | 20 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881431.1 | 1e-178 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
TrEMBL | A0A0E0HGX4 | 0.0 | A0A0E0HGX4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G23670.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14361 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 9e-19 | NAC family protein |