PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G22280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 646aa MW: 70222 Da PI: 9.4648 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 123 | 143 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C f+a+ G Ck G +C+F H ONIVA05G22280.1 123 RTCTFYAQ-GRCKNGKSCTFLH 143 78******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0043 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 119 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGFVGVIAAE KKPALQLHGD 60 EKYQKKAGND PVPPTIDDTS KTGGLHLHGG HVSQSPPDSN ALSSQRFGSS SPGGDMKNKT 120 RKRTCTFYAQ GRCKNGKSCT FLHEGEVSGS DNQVYGNHGG TGEGSEIQHP SSSKERQFKN 180 SAGSSQHEIY RTLVHAYGED NRGLTHPVVK HSCHMLKASH GFKIGGSLTA NPTNEVVQLP 240 VVQEKNHEPY FMGHQISLGT NNCLNDMGAY SRLRLDGGKL QFEVAKGDSP RDSHLSRSYL 300 EKNPLKPDYR YQPFDSTISL DPHQYSKKLS AYGGATENLP HKHQEEKSSS HVSYSLNSYT 360 GFRKQGHDSS DFFLVNQSLR ATSHHGTLPL HQLTPDKDAS HHKGADFDKG GTSRSTLHVS 420 SSSQPVVASA GKLSPIKDEV WITSVPFVPS FNFPDFPGST SPSKSQYDPL VDSIDPPKVE 480 SLNNLKTSNI SCSISSQHVD TNVIRGGSLE KPLTFADKLA RNVSAKGSND FGLISYDRGH 540 SSSLDGDNRV KTCERKNDAS LNNEKSDFRF HLVEHVKELV KPIWKEGNLS KEAHKLIVKK 600 SVDKIFASLE PNQMPETEKA ITTYITASAP KIEKLVKAYV DRHRTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640223.1 | 0.0 | zinc finger CCCH domain-containing protein 36 | ||||
Swissprot | Q75K81 | 0.0 | C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A0E0HGD5 | 0.0 | A0A0E0HGD5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G22280.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11010 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-14 | C3H family protein |
Publications ? help Back to Top | |||
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