PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G11840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 278aa    MW: 29946.5 Da    PI: 10.2
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G11840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1894143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +gr+ AeIrdp     +  kr +lg+f+taeeAa+ ++ a+++++g
  ONIVA05G11840.1  94 RFRGVRRRP-WGRFSAEIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 143
                      69*******.**********9.....445************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-3394157IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2094152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2894152IPR001471AP2/ERF domain
PfamPF008471.1E-1094143IPR001471AP2/ERF domain
PROSITE profilePS5103222.8494151IPR001471AP2/ERF domain
PRINTSPR003671.8E-995106IPR001471AP2/ERF domain
CDDcd000181.32E-22102151No hitNo description
PRINTSPR003671.8E-9117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSPADSLAAG RSRRVGASMP RPKRVRVYFV DADATDTDSS GDERSRPRVR EVIDIDVGAA  60
SPAPAPAPKH PRRLVPTATA ALARRRAGMA ASRRFRGVRR RPWGRFSAEI RDPSLQKRLW  120
LGTFDTAEEA AAVYDDAALR IKGSHAVTNF PSDSDTPSAK AKQMKLHPRR HTTPDKTPSS  180
STAAAAKASV PDPTPAPPEE DRANDSSFNP FASPTSVLRY AAADEVTAPS FEHLLVELGD  240
LSAPPPSTKA AEFDWLPWWE GEDFVTAGLT ASNAVSVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1990151163ATERF1
3gcc_A1e-1990151163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
184101RRAGMAASRRFRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637513.11e-165ethylene-responsive transcription factor 3
TrEMBLA0A0E0HCI60.0A0A0E0HCI6_ORYNI; Uncharacterized protein
TrEMBLA2Y3510.0A2Y351_ORYSI; Uncharacterized protein
STRINGONIVA05G11840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.15e-08ERF domain protein 10