PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G36300.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 273aa    MW: 28732.2 Da    PI: 7.6117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G36300.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.9e-3394151259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  ONIVA03G36300.2  94 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 151
                      8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-3478152IPR003657WRKY domain
SuperFamilySSF1182901.2E-2885152IPR003657WRKY domain
PROSITE profilePS5081129.96488153IPR003657WRKY domain
SMARTSM007748.6E-3993152IPR003657WRKY domain
PfamPF031063.5E-2694151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMVPAALDLP VDVVGAAARE EEEEEEEAPA RSGDGGAAAA SSSSSGEPAA PDKRPAAAEA  60
APAAAATATA KKGQKRARQP RFAFMTKSEI DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT  120
NSKCTVKKRV ERSSDDPSVV ITTYEGQHCH HTASFQRGVG GAAVAAHIHG AAAVALAEQM  180
SAFVSPPPQP HMLYGLPRLH PPSSETAVSC SMPTTTSLQE LNNGEGLQRP GYNNSPQAAV  240
TIAQRPPSPS VPPAVSFDKG LLDDIVPPGV RLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2683150774Probable WRKY transcription factor 4
2lex_A3e-2683150774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418590.0AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631421.11e-147probable WRKY transcription factor 57
RefseqXP_015631422.11e-147probable WRKY transcription factor 57
TrEMBLA0A0E0GU130.0A0A0E0GU13_ORYNI; Uncharacterized protein
STRINGONIVA03G36300.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-49WRKY DNA-binding protein 57