PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G08950.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 539aa    MW: 60246.6 Da    PI: 8.2517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G08950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-182913771199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f++F++dg   f  +v+vf++
  ONIVA03G08950.1 291 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLIFRYDGAAAF--TVTVFDE 377
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B346.28e-154405121487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  ONIVA03G08950.1 440 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 512
                      55889********988554..4555.5599*******9876667777************************96654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.108.5E-4618219IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.01E-4122221IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003644404362No hitNo description
SMARTSM00369144566IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.9584566IPR001611Leucine-rich repeat
PROSITE profilePS514505.2636889IPR001611Leucine-rich repeat
SMARTSM00369189111IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036418089108No hitNo description
PfamPF138558.1E-890148IPR001611Leucine-rich repeat
PROSITE profilePS514507.16591112IPR001611Leucine-rich repeat
SMARTSM003699.9112134IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036420112131No hitNo description
PROSITE profilePS514506.349114135IPR001611Leucine-rich repeat
SMARTSM003697.9135158IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036444135154No hitNo description
SMARTSM0036452158177No hitNo description
PROSITE profilePS514506.249160181IPR001611Leucine-rich repeat
SMARTSM003692.9181204IPR003591Leucine-rich repeat, typical subtype
SMARTSM00364580181200No hitNo description
PROSITE profilePS514506.295183204IPR001611Leucine-rich repeat
PROSITE profilePS5086314.071281378IPR003340B3 DNA binding domain
CDDcd100174.63E-20281376No hitNo description
SuperFamilySSF1019369.02E-19281384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-20282380IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-15283378IPR003340B3 DNA binding domain
PfamPF023625.1E-15291377IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-23423534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15424515IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-5425534IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351427534IPR003340B3 DNA binding domain
PfamPF023621.1E-12441512IPR003340B3 DNA binding domain
CDDcd100177.69E-11442508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP  60
QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI  120
SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN  180
LVCLKSLSLN GNRICQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF  240
DKQIDSNVMM TLAHSACCPD LLQILAQRME DQMANLRLTD FEFFRIILPG SSKTKLKLPY  300
KFARELGDRE LREARLRVAG EGRRPWDVKV FDDDVSGDVY LGRGWQEFAR AHDLRDGHFL  360
IFRYDGAAAF TVTVFDETMC RRDYRRHHDA AGTGSSSSSD SSDAAAAAAA TAAAEGVGDV  420
ALSQFAVTLR QCNLEDKQAQ YLNVPMEFQE AHEYARREKV VLRMRGEAWT VRLKHSRRER  480
GQRTAFRYGW HRFCVDNGLA VGDTCFFRVL REGDLRRGGA ADDHVLKVAV RKADGTTLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4u06_A2e-271322916283LIC10831
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-174B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-175Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0GIW40.0A0A0E0GIW4_ORYNI; Uncharacterized protein
STRINGONIVA03G08950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1123044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]