PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G27820.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 471aa    MW: 50476.4 Da    PI: 8.6281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G27820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19223273256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  ONIVA02G27820.1 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 273
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-32222282No hitNo description
SuperFamilySSF541715.1E-23223281IPR016177DNA-binding domain
SMARTSM003805.9E-39223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32223281IPR001471AP2/ERF domain
PROSITE profilePS5103222.998223280IPR001471AP2/ERF domain
PfamPF008472.8E-12224273IPR001471AP2/ERF domain
PRINTSPR003678.6E-11224235IPR001471AP2/ERF domain
PRINTSPR003678.6E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDAVDRGGGG GGGGARGHGR RWKGKGVSAA ISSSAAETQQ PVPVLEDAPA AAALLRPQKK  60
IRSPDRRLQR SISSLSSAPA SPDSSSVSNP MSPPAMSLPN QPPSSRHIFP FAYDPSPGAA  120
APRLLPLLQY SSLYPQPLLP QQQSPLQNQQ MISFGSSQQQ QQPQFGAASP LFPPQFLPPE  180
EQQRLLLRYW SEALNLSPRG VRGGALRPSL YQHLLRAPGP PKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRTG GSGRTSASAA  300
ASCSSSSSSA PPTPDESHTQ QAQPQPQQPT EESSNTEPKP LLFVAEQDGI PEPELNPQLQ  360
TAEQHGNDGN TAMFQPSVTS GGIWGPADEA WFSAWGPGSS VWDYDMDSAH GLLLQSRLAG  420
EQTGMDYAYT APEVLVAPVP AAGTAMATAA SSSLPPRPPP PCHSPTFAWK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19222280463ATERF1
3gcc_A1e-19222280463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627619.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0E0GA850.0A0A0E0GA85_ORYNI; Uncharacterized protein
TrEMBLB8AFU50.0B8AFU5_ORYSI; Uncharacterized protein
STRINGONIVA02G27820.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-37ERF family protein