PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G00370.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 482aa    MW: 53478.5 Da    PI: 8.0605
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G00370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-275099251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s
  ONIVA02G00370.1 50 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 99
                     8***********************************************86 PP
2K-box73.37.1e-25118213499
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ss  + ee+  ++++ e++ L k+ie ++  + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr +
  ONIVA02G00370.1 118 SSAHEGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQ 211
                      44444788899*********************************************************************************98 PP

            K-box  98 le 99 
                       +
  ONIVA02G00370.1 212 CK 213
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002654.70E-3532118No hitNo description
SMARTSM004321.8E-3541100IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.71641101IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004397IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-2943119IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-274363IPR002100Transcription factor, MADS-box
PfamPF003199.8E-265097IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-276378IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-277899IPR002100Transcription factor, MADS-box
PfamPF014861.2E-24125212IPR002487Transcription factor, K-box
PROSITE profilePS5129713.808128218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAAAAAGMGG GGGVQQQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT  60
FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA  120
HEGEESCVQK WRSEATTLGK KIEAIEGYKS KLLGEGLGSC SVQELQELEV QLEKSLCSIR  180
QKKQKMLMDQ ILELREKEMN LLKENMVLRD QCKALSSPWS TSVGELKNKQ ADDDVHRHED  240
YSGGGVRDDD DRRMMEDVET DLAAANQAGK VLKKGKKKQA KDELDRQKQA EKKRRRLEKA  300
LANSAAIISE LEKKKQKKRE EQQRLDEEGA AIAEAVALHV LIGEDSDEPC HLMLNKHRRC  360
NHWDHSAGFD FAVDAQGADI YPPDGLIQCA DHVYAPKGRC IDWGIGQPLP SWGEVKDLQL  420
QAPCYQGMFH QSVACPGFIA AQAVSSLQIG GDSSDITSPS QGATVVNRML GATNRLNLYR  480
EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-1643122377Myocyte-specific enhancer factor 2B
1tqe_Q3e-1643122377Myocyte-specific enhancer factor 2B
1tqe_R3e-1643122377Myocyte-specific enhancer factor 2B
1tqe_S3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_A3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_B3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_C3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_D3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_E3e-1643122377Myocyte-specific enhancer factor 2B
6c9l_F3e-1643122377Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275295KKKQAKDELDRQKQAEKKRRR
2292296KRRRL
3293316RRRLEKALANSAAIISELEKKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218240.0AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence.
GenBankAP0040490.0AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067200.0AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FZV20.0A0A0E0FZV2_ORYNI; Uncharacterized protein
STRINGONIVA02G00370.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-47AGAMOUS-like 20