PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 358aa    MW: 41273.4 Da    PI: 6.6254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15381201498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                      + +++p k a++++g+ ++     l+++sg++W+v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +gr   +f++ v +f+
  OMERI12G12200.1  38 HGISIPEKVADRFSGQITK--GFNLKSPSGETWRVGI--EKVADELILMSGWEDFAKAHELQENDLLFFSCNGRcnGSFSFDVLIFD 120
                      459**********888555..59999***********..*******************************99874455666666665 PP
2B343.65.2e-14252348198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++vl  +  +++++l++p  fa++h  +  +s+++ l+   + ++W v++ +  + +++  +  W +F ++n+L+eg +++F+l++  ++ ++
  OMERI12G12200.1 252 FVTVLQAPQIHRKCLLIVPSGFAADHLDS--RSQEILLMRpNKKEKWYVRYYHASTTRGFNCQ-RWIKFIRENRLREGYICIFELMKGaRRVTM 342
                      78889999999***************544..44566666637779******556666666666.9*******************9977799999 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      +v+v+ 
  OMERI12G12200.1 343 TVHVIG 348
                      999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-1721124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.32325122IPR003340B3 DNA binding domain
CDDcd100171.69E-1327120No hitNo description
SMARTSM010191.7E-628122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-1728124IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-1237117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-18245348IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-17245348IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-14250347No hitNo description
PfamPF023622.0E-12252348IPR003340B3 DNA binding domain
SMARTSM010196.5E-10252350IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716252350IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGEKGCESCR EWQEHYYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL  60
KSPSGETWRV GIEKVADELI LMSGWEDFAK AHELQENDLL FFSCNGRCNG SFSFDVLIFD  120
ASGCEKVSCF FIGKKNSIGG QNAEQYHLSD SEDTSTPSKF LVGSPHKAST SKKLNGKTKT  180
NPRKEPEDPN NSRSHVKHEM IEEEKSDDDD DDEHADYEHA DYYYSRFANY LTGEEREEIF  240
SLVSLQPGNP VFVTVLQAPQ IHRKCLLIVP SGFAADHLDS RSQEILLMRP NKKEKWYVRY  300
YHASTTRGFN CQRWIKFIRE NRLREGYICI FELMKGARRV TMTVHVIGKV DDRFVLLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8317970.0AL831797.4 Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619600.10.0B3 domain-containing protein Os12g0592300 isoform X2
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0E0FDN10.0A0A0E0FDN1_9ORYZ; Uncharacterized protein
STRINGOMERI12G12140.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-26B3 family protein