PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G25700.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 165aa    MW: 17783.9 Da    PI: 5.9824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G25700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-171463255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++ a+++l+g
  OMERI06G25700.1 14 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEVAARAYDDAARSLRG 63
                     59*******.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-201472IPR016177DNA-binding domain
SMARTSM003809.3E-341477IPR001471AP2/ERF domain
PfamPF008472.4E-101463IPR001471AP2/ERF domain
PROSITE profilePS5103221.4041471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-291472IPR001471AP2/ERF domain
CDDcd000181.80E-191471No hitNo description
PRINTSPR003678.8E-81526IPR001471AP2/ERF domain
PRINTSPR003678.8E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRKSKQPQPS PEIRYRGVRK RPSGRYAAEI RDPAKKTPIW LGTFDSAEVA ARAYDDAARS  60
LRGPTARTNF PLAAPTVESR SGGAPRAAAS ALARSAAPME ATQEEDCHSY CGSSSSVLCE  120
DGSDDAAASR TPLPFDLNMP PPEEELDMAA VADQMGIRYD TLLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1814711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039351e-147AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04.
GenBankAP0054571e-147AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03.
GenBankAP0149621e-147AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641022.12e-84ethylene-responsive transcription factor 3
TrEMBLA0A0E0E5N01e-115A0A0E0E5N0_9ORYZ; Uncharacterized protein
STRINGOMERI06G24040.11e-115(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-21ethylene responsive element binding factor 4