PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G04850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30955.3 Da    PI: 9.1969
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G04850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-2952102151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  OMERI06G04850.1  52 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 102
                      79***********************************************96 PP
2K-box92.95.5e-3113021812100
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++ s +qe+ kLk ++e Lq++qR+llGedL +LslkeL+qLe+q+e+sl +iRs Kn+ ll+q+ el++ke++lq++nk+L++k++e
  OMERI06G04850.1 130 ETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIERSLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQE 218
                      4556789********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-3944103IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.03944104IPR002100Transcription factor, MADS-box
CDDcd002653.69E-4145119No hitNo description
SuperFamilySSF554559.94E-3245118IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-314666IPR002100Transcription factor, MADS-box
PROSITE patternPS00350046100IPR002100Transcription factor, MADS-box
PfamPF003193.9E-2553100IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-316681IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-3181102IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.219132222IPR002487Transcription factor, K-box
PfamPF014865.9E-25135217IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MIHPSPTNGA RLQEGERGKL AGCSEREREK ERRSIKKRFI LRSMGRGKVE LKRIENKISR  60
QVTFAKRRNG LLKKAYELSV LCDAEVALII FSTRGRLFEF STSSCMYKTL ERYRSCNYNL  120
NSCGASAALE TELSNYQEYL KLKTRVEFLQ TTQRNLLGED LVPLSLKELE QLENQIERSL  180
MNIRSSKNQQ LLDQVFELKR KEQQLQDANK DLKRKIQETS GENMLHISCQ DVGPSGHASE  240
ANQEFLHHAI CDPSLHIGYQ AYMDHLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-2112821613101Developmental protein SEPALLATA 3
4ox0_B3e-2112821613101Developmental protein SEPALLATA 3
4ox0_C3e-2112821613101Developmental protein SEPALLATA 3
4ox0_D3e-2112821613101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641840.0AK064184.1 Oryza sativa Japonica Group cDNA clone:002-104-B10, full insert sequence.
GenBankOSU788900.0U78890.1 Oryza sativa MADS box protein (OsMADS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641896.11e-163MADS-box transcription factor 5
SwissprotA2Y9P01e-164MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-164MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A0E0DXE20.0A0A0E0DXE2_9ORYZ; Uncharacterized protein
STRINGORUFI06G04180.11e-162(Oryza rufipogon)
STRINGOS06T0162800-011e-162(Oryza sativa)
STRINGONIVA06G05400.11e-162(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.27e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]