PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G04590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 351aa MW: 37292.4 Da PI: 4.57 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 124 | 174 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +g++ AeIr+ +++r++lg+f+taeeAa+ +++a+++l+g+ OMERI06G04590.1 124 KFRGVRKRP-WGKYGAEIRV----SqQSARVWLGTFDTAEEAARVYDHAALRLRGP 174 89*******.**********....3245**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.0E-29 | 123 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-20 | 124 | 182 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.81E-29 | 124 | 182 | No hit | No description |
PROSITE profile | PS51032 | 22.168 | 124 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-35 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-11 | 124 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVEVVVKKEA RSIVRGRWHV EASKEAAVAA APAVVAAPAP RVVRVLYRDH DATDSSGDDD 60 GEDDAPRRAR LLVHEIHVAR QPVAMSPAAA SSSQRRRVGP MKRRTEAAVD ATAAAVAEVA 120 PERKFRGVRK RPWGKYGAEI RVSQQSARVW LGTFDTAEEA ARVYDHAALR LRGPSATTNF 180 PVTPTAAPSP PPPRDTNAGA ASGYDESSDE SQLVGSPVSV LRPMPARATA KKEAKEEDDS 240 APDILAEDAA RGVSTGDGLI SPFTGDVMNF PPPDEDMFGG GIAFGEPTPP PMVFDDDCMA 300 RLGHAPNDDE HPGSSFLDDD LGDLPSWTEV DGFFSDVGGD DLFAAEPLPA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 124 | 181 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642210.2 | 1e-151 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | A0A0E0DXA8 | 0.0 | A0A0E0DXA8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G04450.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-26 | cytokinin response factor 4 |