PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00490.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 488aa    MW: 53190.4 Da    PI: 7.3449
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-082883192354
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+  ++  LA+++gL+ +qV++WF N R +
  OMERI06G00490.1 288 PYPNDVDKHILARQTGLSRSQVSNWFINARVR 319
                      8*****************************88 PP
2BELL993.8e-32163231472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +l+++ka++ls++eeVd+rY++y+eq+++v  sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  OMERI06G00490.1 163 DLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 231
                      6899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-6696229IPR006563POX domain
PfamPF075263.0E-39102227IPR006563POX domain
SMARTSM003896.8E-6257327IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-18266329IPR009057Homeodomain-like
CDDcd000862.96E-9275324No hitNo description
PROSITE profilePS5007110.916275323IPR001356Homeobox domain
PfamPF059202.3E-13287319IPR008422Homeobox KN domain
SuperFamilySSF466898.13E-12288330IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMASHHHHEH HLLDMSSSPN ATAIISSFDH AAGLLSLHDV AAAEHHHLRG GGGGGLQLPS  60
PWSQQQVSLS LYNNAAGAAG SPPSSLVAHQ QLAAAQPLLF QLRGSKYLGP VKALLAEFCS  120
LDVEAMDGAK QQRAPNPKIG KWDDVEGSGS WGNLSLTSMD LLDLERRKAR ILSMVEEVDR  180
RYRRYREQMR AVEVSFEAVA GGGAAQVYTK LAMRAMSRHF RCLRDALVGQ VRALRKAMGE  240
SQRDAAGGGV ATAAPGATKG DTPRLRVLDQ CLRQQRAFQQ SGAIDNFPYP NDVDKHILAR  300
QTGLSRSQVS NWFINARVRL WKPMIEDMYK EETKPESSDG NNKLNPSAAG NKQQHRDRDD  360
NKNYTATTTA AASLVQQSSY HLHLRSSGNP NSSSLMIPAA AASTSIDHHH HDGSHQLLGS  420
HSYSSAAGLH HGGAVSLTLG LQQQQQPFAA SMMQQQSFMV EAAEEEEEDD VLPYRNLMES  480
QLLHDFAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.10.0homeobox protein BEL1 homolog
TrEMBLA0A0E0DVM30.0A0A0E0DVM3_9ORYZ; Uncharacterized protein
STRINGOMERI06G00510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-61TALE family protein